Community Level Physiological Profiles (Clpp) in the Rhizosphere of Cassava and Forested Agroecosystems
Abstract
The functional diversity and similarity in soil microbial community in a cultivated and forested tropical agroecosystem was assessed using the Biolog ecoplate. The CLPP of the soil extract was able to detect the effect of increasing N-level of the cultivated soil with fertilizer NPK on the pattern of substrate utilization in the Biolog ecoplate. Similarity in microbial nutrition pattern as indicated by colour change in the Biolog ecoplate wells inoculated with soil samples from NPK fertilized plot was compared with that from the forest plot. Results from a multivariate analysis of variance (MANOVA) of the normalized average-well colour density (AWCD) values of ecoplate readings indicated a close relationship between CLPP in the NPK and forested plots. The functional diversity (H’) of the NPK fertilized and unfertilized plots were higher when compared to the forest plot. The tetrazolium reduction, as a result of microbial activity, increased with incubation time. Sixteen (16) out of the 31 substrate wells were significantly utilized with increased incubation of extracts from both soils. The utilization of substrates (N-acetyl-D-glucosamine, L-asparagine, 2-hydroxybenzoate, -hydroxybutyric acid, D-malic acid and L-serine) were significantly enhanced by NPK fertilizer in the cassava plot.
References
Binnerup, S. J., Jensen, D.J, Thordal-Christensen, H. 1993. Detection of viable but non-culturabel Pseudomonas fluorescens DF 57 in soil using a microcolony epifluorescense technique. FEMS Microbial Ecol. 12, 17-105.
Garland, J. L. 1996. Patterns of potential C source utilization by rhizosphere communities. Soil Biol. Biochem. 28, 223-230.
Garland, J. L. 1997. Analysis and interpretation of community-level physiological profiles in microbial ecology. FEMS Microbiology Ecology 24, 289-300.
Gauch, H. G. 1982. Multivariate analysis in community ecology. Cambridge University Press Cambridge.
Griffiths, B. S., Karl, R., Ronald, E. W. 1997. Relationship between functional diversity and genetic diversity in complex microbial communities. In: Insam, H., and Ragger A. (eds.) Microbial communities: functional versus structural approaches. Pp 1-9.
Hopkins, D. W., Macnaughton, S. J., O’ Donnell, A. G. 1991. A dispersion and differential centrifugation technique for representatively sampling microorganisms from the soils. Soil Biol. Biochem. 23, 217-225.
Howard, P. J. A. 1997. Analysis of data from Biolog plates: Comments on the method of Garland and Mills. Newsletter.
Insam, H. 1997. A new set of substrates proposed for community characterization in environmental samples. In: Insam, H., and Ragger A. (eds.) Microbial communities: functional versus structural approaches. Pp 259-260.
Kennedy, A. C., Gewin, V. I. 1997. Characterization of microbial communities in agro-ecosystems. In: Insam, H. and Rangger, A. (eds.) Microbial communities: functional versus structural approaches. Pp 121-131.
Sorensen, A.1997. The rhizosphere as a habitat for soil microorganisms. In: Van Elsas, J. D., Trevors, J. T. and Wellington, E. M. H. (eds.) Modern Soil Microbiology. Pp 21-45.
Spaccini, R., Zena, A., Igwe, C. A., Mbagwu, J. S. C., Piccolo, A. 2001. Carbohydrates in waterstable aggregates and particle size fractions of forested and cultivated soils in two contrasting tropical ecosystems. Biogeochemistry. 53, 1-22.
Winding, A., Hendriksen, N. B.1997. Biolog substrate utilization assays for metabolic fingerprints of soil bacteria; incubation effects. In: Insam, H. and Rangger, A. (eds.) Microbial communities: functional versus structural approaches. Pp 195-205.